Publications

Research Articles

Amplified fragment length polymorphism based genetic diversity of tropical legume: Lablab purpureus var. typicus.

Vishwajeet Singh, Nitin Wahi, Gunjan Garg, Anshu Singh (2023)

Legume Research – An International Journal, LR-4814
https://www.researchgate.net/publication/359602529

Discovery of Small Molecules from Echinacea angustifolia Targeting RNA-Dependent RNA Polymerase of Japanese Encephalitis Virus 2022

Pardeep Yadav, Sherif A. El-Kafrawy, Mai M. El-Day, Wejdan T. Alghafari, Arwa A. Faizo, Saurabh Kumar Jha, Vivek Dhar Dwivedi, and Esam I. Azhar. 2022.

Life 12, no. 7: 952.
https://doi.org/10.3390/life12070952

Computational assessment of Withania somnifera phytomolecules as putative inhibitors of Mycobacterium tuberculosis CTP synthase PyrG

Ankita Singh, Sanjay Kumar, Vivek Kumar Gupta, Shailja Singh, Vivek Dhar Dwivedi, Usha Mina (2022).

Journal of Biomolecular Structure and Dynamics, 1-14
https://doi.org/10.1080/07391102.2022.2074142

Discovery of bispecific lead compounds from Azadirachta indica against ZIKA NS2B-NS3 Protease and NS5 RNA dependent RNA polymerase using molecular simulations.

Sanjay Kumar, Sherif A El-Kafrawy, Shiv Bharadwaj, SS Maitra, Thamir A Alandijany, Arwa A Faizo, Aiah M Khateb, Vivek Dhar Dwivedi, Esam I Azhar (2022).

Molecules, 27(8), 2562.
https://doi.org/10.3390/molecules27082562

Understanding on the possible routes for SARS CoV-2 invasion via ACE2 in the host linked with multiple organs damage.

Nikhil Kirtipal, Sanjay Kumar, Sumit Kumar Dubey, Vivek Dhar Dwivedi, K Gireesh Babu, Petr Malý, Shiv Bharadwaj (2022).

Infection, Genetics and Evolution, 105254.
https://doi.org/10.1016/j.meegid.2022.105254

Potential emerges of therapeutic protein production using glycol engineering technology of plants.

Gunjan Garg, S.K. Yadav, Nitin Wahi, Siya Ram (2022)

Trends in Carbohydrate Research, 14(1), 15-24
https://www.trendscarbo.com/getf_shoppingcart.php?id=987074761

Ecological and genetical diversity of black fungus- Aspergillus sp. inhabiting stone monuments of Mughal dynasty in Agra (UP) analysed by RAPD method.

Vishwajeet Singh, Nitin Wahi, Gunjan Garg, Anshu Singh, Seema Bhadauria (2022)

Archives of Phytopathology and plant protection, 1-18
https://www.tandfonline.com/doi/abs/10.1080/03235408.2022.2047377

Studies on genetic variability, correlation analysis, character association and path analysis of phenotypic characteristics of twelve mega varieties of rice and its near-isogenic lines carrying high grain number per panicle QTL qGN4.1.

Vijay Kumar Singh, Nitin Wahi, Sangam Kumar Mishra, B D Singh (2022)

Current trends in Biotechnology and Pharmacy, 16(1), 35-45
https://abap.co.in/index.php/home/article/view/305

Computational and In Vitro Experimental Investigations Reveal Anti-Viral Activity of Licorice and Glycyrrhizin against Severe Acute Respiratory Syndrome Coronavirus 2.

Ahmed M Tolah, Lamya M Altayeb, Thamir A Alandijany, Vivek Dhar Dwivedi, Sherif A El-Kafrawy, Esam I Azhar (2021).

Pharmaceuticals, 14(12), 1216.
https://doi.org/10.3390/ph14121216

Promising Antiviral Activities of Natural Flavonoids against SARS-CoV-2 Targets: Systematic Review.

Ridhima Kaul, Pradipta Paul, Sanjay Kumar, Dietrich Büsselberg, Vivek Dhar Dwivedi, and Ali Chaari (2021).

International Journal of Molecular Sciences. 2021, 22(20), 11069;
https://doi.org/10.3390/ijms222011069

Mechanistic insights into the Japanese Encephalitis Virus RNA dependent RNA polymerase protein inhibition by bioflavonoids from Azadirachta indica.

Vivek Dhar Dwivedi, Ankita Singh, Sherif Aly El-Kafraway, Thamir A. Alandijany, Arwa A. Faizo, Leena Hussein Bajrai, Mohammad Amjad Kamal, Esam Ibraheem Azhar (2021).

Scientific Reports.
DOI: 10.1038/s41598-021-96917-0

Cannabinoid type-2 receptor agonist, JWH133 as a possible candidate for targeting infection, inflammation, and immunity in COVID-19.

Niraj Kumar Jha, Charu Sharma, MFN Meeran, Saurabh Kumar Jha, Vivek Dhar Dwivedi, Piyush Kumar Gupta, Abhijit Dey, Kavindra Kumar Kesari, Shreesh Ojha (2021).

Immuno 2021, 1(3), 285-304;
https://doi.org/10.3390/immuno1030020

Exploration of natural compounds with anti-SARS-CoV-2 activity via inhibition of SARS-CoV-2 Mpro.

Shiv Bharadwaj, Amit Dubey, Umesh Yadava, Sarad Kumar Mishra, Sang Gu Kang, Vivek Dhar Dwivedi (2021). .

Briefings in Bioinformatics, Volume 22, Issue 2, March 2021, Pages 1361–1377,
DOI: 10.1093/bib/bbaa382.

A statistical quality control (SQC) methodology for Gold Nanoparticles based Immune-Chromatographic Rapid test kits validation.

Prince Manta, Nitin Wahi, Alok Bharadwaj, Gurmeet Kour, Deepak N Kapoor (2021)

Nanoscience & Nanotechnology-Asia, 11(6), e080121190006
https://www.eurekaselect.com/public/article/113125

Occurrence of Inborn errors of metabolism in Newborns, Diagnosis and prophylaxis. Endocrine, Metabolic & Immune Disorders-Drug Targets.

Alok Bharadwaj, Nitin Wahi, Aditya Saxena (2021)

Endocrine, Metabolic & Immune Disorders-Drug Targets, 21(4), 592-616
https://www.eurekaselect.com/article/112636

SARS-CoV-2 Mpro inhibitors: identification of anti-SARS-CoV-2 Mpro compounds from FDA approved drugs.

Shiv Bharadwaj, Esam Ibraheem Azhar, Mohammad Amjad Kamal, Leena Hussein Bajrai, Amit Dubey, Kanupriya Jha, Umesh Yadava, Sang Gu Kang & Vivek Dhar Dwivedi (2020).

Journal of Biomolecular Structure and Dynamics.
DOI: 10.1080/07391102.2020.1842807

Synergistic effect of vitamin D and remdesivir can fight COVID-19.

Aditya Arya & Vivek Dhar Dwivedi (2020)

Journal of Biomolecular Structure and Dynamics.
DOI: 10.1080/07391102.2020.1773929.

Computational insights into tetracyclines as inhibitors against SARS-CoV-2 Mpro via combinatorial molecular simulation calculations.

Shiv Bharadwaj, Kyung Eun Lee, Vivek Dhar Dwivedi, Sang Gu Kang (2020).

Life Sciences.
DOI: 10.1016/j.lfs.2020.118080.

α-Bisabolol, a Dietary Bioactive Phytochemical Attenuates Dopaminergic Neurodegeneration through Modulation of Oxidative Stress, Neuroinflammation and Apoptosis in Rotenone-Induced Rat Model of Parkinson’s Disease.

Hayate Javed, MF Meeran, Sheikh Azimullah, Lujain Bader Eddin, Vivek Dhar Dwivedi, Niraj Kumar Jha, Shreesh Ojha (2020).

Biomolecules.
DOI: 10.3390/biom10101421

DenvInD: Dengue Virus Inhibitors Database for Clinical and Molecular Research.

Vivek Dhar Dwivedi, Aditya Arya, Pardeep Kumar, Rajesh Kumar, Gajendrs PS Raghava (2020).

Briefings in Bioinformatics.
DOI: 10.1093/bib/bbaa098.

Computational investigation of phytomolecules as resuscitation-promoting factor B (RpfB) inhibitors for clinical suppression of Mycobacterium tuberculosis dormancy reactivation.

Vivek Dhar Dwivedi, Aditya Arya, Tanuj Sharma, Shweta Sharma, Shripad A. Patil & Vivek Kumar Gupta (2020).

Infection, Genetics and Evolution.
DOI: 10.1016/j.meegid.2020.104356

A multi-target approach for discovery of antiviral compounds against dengue virus from green tea.

Pooja Mahajan, Shantanu Tomar, Adarsh Kumar, Nilesh Yadav, Aditya Arya, & Vivek Dhar Dwivedi (2020).

Network Modeling Analysis in Health Informatics and Bioinformatics, 9(1), 1-10.
DOI: 10.1007/s13721-020-0222-4

Density functional theory and molecular dynamics simulation support Ganoderma lucidum triterpenoids as broad range antagonist of matrix metalloproteinases.

Shiv Bharadwaj, Kyung EunLee, Vivek Dhar Dwivedi, Umesh Yadava, Matthias Nees, Sang GuKang (2020).

Journal of Molecular Liquids.
DOI: 10.1016/j.molliq.2020.113322

Structure-based screening and validation of bioactive compounds as Zika virus Methyltransferase (MTase) inhibitors through first-principle density functional theory, classical molecular simulation and QM/MM affinity estimation.

Shiv Bharadwaj, Akhilesh Kumar Rao, Vivek Dhar Dwivedi, Sarad Kumar Mishra & Umesh Yadava. (2020).

Journal of Biomolecular Structure and Dynamics.
DOI: 10.1080/07391102.2020.1747545.

Anti-Dengue infectivity evaluation of bioflavonoid from Azadirachta indica by dengue virus serine protease inhibition.

Vivek Dhar Dwivedi, Shiv Bharadwaj, Sumbul Afroz, Nooruddin Khan, Mairaj Ahmed Ansari, Umesh Yadava, Ramesh Chandra Tripathi, Indra Prasad Tripathi, Sarad Kumar Mishra & Sang Gu Kang (2020).

Journal of Biomolecular Structure and Dynamics.
DOI: 10.1080/07391102.2020.1734485

The transcriptomic evidence on the role of abdominal visceral vs. subcutaneous adipose tissue in the pathophysiology of diabetes in Asian Indians indicates the involvement of both.

Anshul Kumar, Pradeep Tiwari, Aditya Saxena, Naincy Purwar, Nitin Wahi, Balram Sharma, Sandeep Kumar Mathur (2020)

Biomolecules, 10(9), 1230
https://www.mdpi.com/2218-273X/10/9/1230

Functional interactomes of genes showing association with type-2 diabetes and its intermediate phenotypic traits point towards adipo-centric mechanisms in its pathophysiology.

Aditya Saxena, Nitin Wahi, Anshul Kumar, Sandeep Kumar Mathur (2020)

Biomolecules, 10(4), 601
https://www.mdpi.com/2218-273X/10/4/601

The common pathophysiological threads between Asian Indian diabetic’s ‘Thin Fat Phenotype’ and partial lipodystrophy: the peripherial adipose tissue transcriptomic evidences.

Aditya Saxena, Pradeep Tiwari, Nitin Wahi, Anshul Kumar, Sandeep Kumar Mathur (2020)

Adipocyte, 9(1), 253-263
https://www.tandfonline.com/doi/full/10.1080/21623945.2020.1776082

A lung transcriptomic analysis for exploring hose response in COVID-19.

Aditya Saxena, Uma Chaudhary, Alok Bharadwaj, Nitin Wahi, Jitendra Reddy Kalli, Shravya Gupta, Sparsh Kumar, Somya Gupta, Utkarsh Raj (2020)

Journal of Pure and Applied Microbiology, 14(suppl 1), 1077-1081
https://microbiologyjournal.org/a-lung-transcriptomic-analysis-for-exploring-host-response-in-covid-19/

Proteome Organization of COVID-19: Illustrating targets for vaccine development.

Alok Bharadwaj, Nitin Wahi, Aditya Saxena, Divya Chaudhary (2020)

Journal of Pure and Applied Microbiology, 14(suppl 1), 831-840
https://microbiologyjournal.org/proteome-organization-of-covid-19-illustrating-targets-for-vaccine-development/

Discovery of Ganoderma lucidum triterpenoids as potential inhibitors against Dengue virus NS2B-NS3 protease.

Bharadwaj S, Lee KE, Dwivedi VD, Yadava U, Panwar A, Lucas SJ, Pandey A, Kang SG (2019).

Scientific reports. 9(1):1-12
DOI: 10.1038/s41598-019-55723-5

Integration of biometric ID for the effective 1 collection and epidemiological evaluation of antibiotic prescription in tuberculosis and other diseases: A medical hypothesis.

Arya A,Singh S, Dwivedi VD, Shakila H, (2019),

Journal of Global Antimicrobial Resistance.
DOI: 10.1016/j.jgar.2019.12.003

Computational aided mechanistic understanding of Camellia sinensis bioactive compounds against co‐chaperone p23 as potential anticancer agent.

Bharadwaj S, Lee KE, Dwivedi VD, Yadava U, Kang SG, (2019).

Journal of cellular biochemistry.
DOI: 10.1002/jcb.29229

Transcriptome profiling reveals association of peripherial adipose tissue pathology with type-2 diabetes in Asian Indians.

Aditya Saxena, Pradeep Tiwari, Nitin Wahi, Arpana Soni, Ram Chandra Bansiwal, Anshul Kumar, Balram Sharma, Poonam Punjabi, Nidhi Gupta, Babita Malik, Krishna Mohan Medicherla, Prashanth Suravajhala, Sandeep Kumar Mathur (2019)

Adipocyte, 8(1), 125-136
https://www.tandfonline.com/doi/full/10.1080/21623945.2019.1595269

Application of medicinal plants in management of endogenous bioactive molecules as potential biomarkers for cardiovascular diseases and disorders.

Jitendra Gupta, Reena Gupta, Varun Kalra, Nitin Wahi (2019)

Current Trends in Biotechnology and Pharmacy, 13(3), 350-365
https://abap.co.in/index.php/home/issue/view/10/8

Phytochemical screening and antibacterial activity of fruit extract of Syzygium aromaticum.

Alok Bharadwaj, Digamber, Nitin Wahi (2019)

Bulletin of Environment, Pharmacology and Life Sciences, 8(8), 122-128
https://bepls.com/beplsjuly2019/21.pdf

A web resource for designing subunit vaccine against major pathogenic species of bacteria.

Raghava GPS, Nagpal G, Usmani SS, (2018).

Frontiers in immunology.

BOOKS | BOOK CHAPTERS

Fundamentals of Ecology and Environment. Pathfinder Publication 2018,

Kumar, P and Mina, U.

ISBN : 978-8-19-346550-9

CONFERENCE ABSTRACTS | PROCEEDINGS

Books

book

LIFE SCIENCES, Fundamentals and Practice

Pranav Kumar | Usha Mina

2022 Edition

BIOPHYSICS
Tools and Techniques

Pranav Kumar

2022 Edition

BIOTECHNOLOGY
A problem approach

Pranav | Praveen | Usha Mina

2022 Edition

book

ECOLOGY & ENVIRONMENT
Fundamentals

Pranav Kumar | Usha Mina

2022 Edition